More Jmol Tools

Molecular Orbital Display - MO Menu Files Only:
mo next; mo previous; mo lumo; mo homo
Model Orientation
zoom in; zoom out; left; right; front; back; top; bottom
Model Display
color: all atoms cpk; mep: roygb; roy; gb; rwb
Miscellaneous Utility
display model file; invert carbon atom; Jmol script help
Locate Model Subunits and Functional Groups
CH; CH2; CH3; CR4; RCCR; R2CCR2; ROH; ROR
R2CO, RCHO; RCO2H; RCO2R; RCONR2; NR3
ROCOCOR
Locate Atom Hybridization
spC; sp2C; sp3C; sp2O; spN; sp2N; sp3N
Useful Animation Scripts
Cyclohexane Chair Flip | S_N2 Walden Inversion
Ethane C-C Rotation

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JPG Image

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Sample Virtual Molecular Model Exercises

The page authors are working on a series of sample molecular modeling exercises for use with the Virtual Molecular Model Kit. In the near future, the Sample Exercises link will point to a growing list of these exercises. Our goal is to provide exercises that we hope will be of interest to a wide range of chemistry and other science teachers. In the meantime, we hope that you have some fun playing with out model kit.

Project Status: The More Tools link leads to a menu of tools that should be of use in designing model exercises, including a functional group identifier. The More Tools link menu also has links to three sample model exercise animations.

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JME Structure Drawing Applet
Courtesy of Peter Ertl, Novartis

Draw a structural formula and click the Load Model link to transfer the model to the viewer window.

Load Model

JME Editor Help | Newton JME Tutorial

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